Index

A

add_column_name_descriptions() (in module DiadFit.importing_data_files) add_datetime_and_duration_cols() (in module DiadFit.Psensor) add_noise_to_variable() (in module DiadFit.CO2_in_bubble_error) add_peak() (in module DiadFit.diads)

amplitude (DiadFit.diads.generic_peak_config attribute) apply_and_save_vertical_shift_to_model() (in module DiadFit.densimeters) apply_and_save_vertical_shift_to_ucb_densimeter() (in module DiadFit.densimeters) assess_diad1_skewness() (in module DiadFit.diads) assess_diad2_skewness() (in module DiadFit.diads)

B

build_piecewise_poly_by_density() (in module DiadFit.densimeters)

C

C13_prom (DiadFit.diads.diad2_fit_config attribute) calc_prop_knownP_EOS_DZ2006() (in module DiadFit.CO2_EOS) calculate_Ar_line_positions() (in module DiadFit.argon_lines) calculate_Ar_splitting() (in module DiadFit.argon_lines) calculate_CO2_density_homog_T() (in module DiadFit.CO2_EOS) calculate_CO2_density_homog_T_SW96_NIST() (in module DiadFit.CO2_EOS) calculate_dens_error() (in module DiadFit.densimeters) calculate_Densimeter_std_err_values() (in module DiadFit.densimeters) calculate_Densimeter_std_err_values_smooth() (in module DiadFit.densimeters) calculate_density_cornell() (in module DiadFit.densimeters) calculate_density_cornell_old() (in module DiadFit.densimeters) calculate_Density_Sterner_Pitzer_1994() (in module DiadFit.CO2_EOS) calculate_density_ucb() (in module DiadFit.densimeters) calculate_density_ucb_new() (in module DiadFit.densimeters) calculate_DPdt() (in module DiadFit.relaxifi) calculate_dR_dt() (in module DiadFit.relaxifi) calculate_entrapment_P_XH2O() (in module DiadFit.CO2_EOS) calculate_errors_no_densimeter() (in module DiadFit.densimeters) calculate_exponential_time_steps() (in module DiadFit.relaxifi) calculate_generic_std_err_values() (in module DiadFit.densimeter_fitting) calculate_HB_Diad_area_ratio() (in module DiadFit.diads) calculate_molar_volume_DZ2006() (in module DiadFit.CO2_EOS) calculate_molar_volume_ind_DZ2006() (in module DiadFit.CO2_EOS) calculate_Ne_line_positions() (in module DiadFit.ne_lines) calculate_Ne_splitting() (in module DiadFit.ne_lines) calculate_P_for_rho_T() (in module DiadFit.CO2_EOS) calculate_P_for_rho_T_DZ06() (in module DiadFit.CO2_EOS) calculate_P_for_rho_T_SP94() (in module DiadFit.CO2_EOS) calculate_P_for_rho_T_SW96() (in module DiadFit.CO2_EOS) calculate_P_SP1994() (in module DiadFit.CO2_EOS) calculate_Pressure_DZ2006() (in module DiadFit.CO2_EOS) calculate_Pressure_ind_DZ2006() (in module DiadFit.CO2_EOS)

calculate_rho_for_P_T() (in module DiadFit.CO2_EOS) calculate_rho_for_P_T_H2O() (in module DiadFit.CO2_EOS) calculate_rho_for_P_T_SP94() (in module DiadFit.CO2_EOS) calculate_rho_for_P_T_SW96() (in module DiadFit.CO2_EOS) calculate_SO2_CO2_mol_prop_wave_indep() (in module DiadFit.molar_gas_proportions) calculate_SO2_CO2_ratio() (in module DiadFit.molar_gas_proportions) calculate_SP19942() (in module DiadFit.CO2_EOS) calculate_SP1994_Temp() (in module DiadFit.CO2_EOS) calculate_T_for_rho_P() (in module DiadFit.CO2_EOS) calculate_T_for_rho_P_SP94() (in module DiadFit.CO2_EOS) calculate_T_for_rho_P_SW96() (in module DiadFit.CO2_EOS) calculate_Temp_Sterner_Pitzer_1994() (in module DiadFit.CO2_EOS) calculate_temperature_density_MC() (in module DiadFit.error_propagation) calculate_wavelength_dependent_cross_section() (in module DiadFit.molar_gas_proportions) calculate_wavelength_independent_cross_section() (in module DiadFit.molar_gas_proportions) calculates_time_witec() (in module DiadFit.importing_data_files) cbrt_calc() (in module DiadFit.CO2_EOS) cent (DiadFit.diads.generic_peak_config attribute) check_for_duplicates() (in module DiadFit.importing_data_files) check_if_spectra_negative() (in module DiadFit.H2O_fitting) checks_if_general_witec() (in module DiadFit.importing_data_files) checks_if_imagescan_witec() (in module DiadFit.importing_data_files) checks_if_video_witec() (in module DiadFit.importing_data_files) combine_diad_outputs() (in module DiadFit.diads) config_crustalmodel (class in DiadFit.relaxifi) convert_co2_dens_press_depth() (in module DiadFit.error_propagation) convert_co2_dens_press_depth_old() (in module DiadFit.density_depth_crustal_profiles) convert_cross_section_wavelength1_wavelength2() (in module DiadFit.molar_gas_proportions) convert_datastamp_to_metadata() (in module DiadFit.importing_data_files) convert_pressure_depth_2step() (in module DiadFit.density_depth_crustal_profiles) convert_pressure_depth_3step() (in module DiadFit.density_depth_crustal_profiles) convert_pressure_depth_4step() (in module DiadFit.density_depth_crustal_profiles) convert_pressure_to_depth() (in module DiadFit.density_depth_crustal_profiles)

D

denlinger_lerner() (in module DiadFit.density_depth_crustal_profiles) density_to_mol_vol() (in module DiadFit.CO2_EOS) diad1_fit_config (class in DiadFit.diads) diad2_fit_config (class in DiadFit.diads) diad_id_config (class in DiadFit.diads) diad_prom (DiadFit.diads.diad1_fit_config attribute) (DiadFit.diads.diad2_fit_config attribute) diad_sigma (DiadFit.diads.diad1_fit_config attribute) (DiadFit.diads.diad2_fit_config attribute) diad_sigma_max_allowance (DiadFit.diads.diad1_fit_config attribute) (DiadFit.diads.diad2_fit_config attribute) diad_sigma_min_allowance (DiadFit.diads.diad1_fit_config attribute) (DiadFit.diads.diad2_fit_config attribute) DiadFit.argon_lines module DiadFit.CO2_EOS module DiadFit.CO2_in_bubble_error module DiadFit.densimeter_fitting module

DiadFit.densimeters module DiadFit.density_depth_crustal_profiles module DiadFit.diads module DiadFit.error_propagation module DiadFit.H2O_fitting module DiadFit.importing_data_files module DiadFit.molar_gas_proportions module DiadFit.ne_lines module DiadFit.Psensor module DiadFit.relaxifi module dpi (DiadFit.diads.diad1_fit_config attribute) (DiadFit.diads.diad2_fit_config attribute)

E

extract_accumulations_witec() (in module DiadFit.importing_data_files) extract_acq_params_horiba() (in module DiadFit.importing_data_files) extract_acq_params_witec() (in module DiadFit.importing_data_files) extract_date_witec() (in module DiadFit.importing_data_files) extract_duration_witec() (in module DiadFit.importing_data_files) extract_integration_time_witec() (in module DiadFit.importing_data_files)

extract_laser_power_witec() (in module DiadFit.importing_data_files) extract_objective_witec() (in module DiadFit.importing_data_files) extract_spectral_center_witec() (in module DiadFit.importing_data_files) extract_temp_Aranet() (in module DiadFit.importing_data_files) extract_time_stamp_witec() (in module DiadFit.importing_data_files) extract_xstal_MI_name() (in module DiadFit.H2O_fitting) extracting_filenames_generic() (in module DiadFit.importing_data_files)

F

filter_Ar_Line_neighbours() (in module DiadFit.argon_lines) filter_by_string() (in module DiadFit.diads) filter_Ne_Line_neighbours() (in module DiadFit.ne_lines) filter_splitting_prominence() (in module DiadFit.diads) find_closest() (in module DiadFit.ne_lines) find_host_peak_trough_pos() (in module DiadFit.H2O_fitting) find_max_row() (in module DiadFit.ne_lines) find_P_for_kmdepth() (in module DiadFit.relaxifi) fit_area_for_silicate_region() (in module DiadFit.H2O_fitting) fit_area_for_water_region() (in module DiadFit.H2O_fitting) fit_diad_1_w_bck() (in module DiadFit.diads)

fit_diad_2_w_bck() (in module DiadFit.diads) fit_gauss (DiadFit.diads.diad1_fit_config attribute) (DiadFit.diads.diad2_fit_config attribute) fit_gaussian_voigt_generic_diad() (in module DiadFit.diads) fit_generic_peak() (in module DiadFit.diads) fit_Ne_lines() (in module DiadFit.ne_lines) fit_Ne_pk() (in module DiadFit.ne_lines) fit_peaks (DiadFit.diads.diad1_fit_config attribute) (DiadFit.diads.diad2_fit_config attribute) (DiadFit.diads.generic_peak_config attribute) Francis_pureCO2() (in module DiadFit.densimeters)

G

gauss_amp (DiadFit.diads.diad1_fit_config attribute) (DiadFit.diads.diad2_fit_config attribute) generate_Ar_corr_model() (in module DiadFit.argon_lines) generate_Ne_corr_model() (in module DiadFit.ne_lines) generic_peak_config (class in DiadFit.diads) get_all_txt_files() (in module DiadFit.importing_data_files) get_CO2dens_P() (in module DiadFit.relaxifi) get_data() (in module DiadFit.importing_data_files)

get_EOS_params() (in module DiadFit.CO2_EOS) get_files() (in module DiadFit.importing_data_files) (in module DiadFit.Psensor) get_initial_CO2() (in module DiadFit.relaxifi) get_p_medians() (in module DiadFit.Psensor) get_R() (in module DiadFit.relaxifi) get_settings() (in module DiadFit.importing_data_files) get_value() (in module DiadFit.CO2_in_bubble_error) get_video_mag() (in module DiadFit.importing_data_files)

H

HB_amp_max_allowance (DiadFit.diads.diad1_fit_config attribute) (DiadFit.diads.diad2_fit_config attribute) HB_amp_min_allowance (DiadFit.diads.diad1_fit_config attribute) (DiadFit.diads.diad2_fit_config attribute) HB_prom (DiadFit.diads.diad1_fit_config attribute) (DiadFit.diads.diad2_fit_config attribute)

HB_sigma_max_allowance (DiadFit.diads.diad1_fit_config attribute) (DiadFit.diads.diad2_fit_config attribute) HB_sigma_min_allowance (DiadFit.diads.diad1_fit_config attribute) (DiadFit.diads.diad2_fit_config attribute) hill_zucca() (in module DiadFit.density_depth_crustal_profiles)

I

identify_diad_group() (in module DiadFit.diads) identify_diad_peaks() (in module DiadFit.diads)

identify_Ne_lines() (in module DiadFit.ne_lines) ind_density_homog_T_h_CO2_SW96_loaded_phase_boundary_1sam() (in module DiadFit.CO2_EOS)

L

line_contains_video_image() (in module DiadFit.importing_data_files) loop_all_FI_MC() (in module DiadFit.error_propagation) loop_approx_diad_fits() (in module DiadFit.diads) loop_convert_datastamp_to_metadata() (in module DiadFit.importing_data_files) loop_diad_skewness() (in module DiadFit.diads)

loop_pressure_depth_2step() (in module DiadFit.density_depth_crustal_profiles) loop_pressure_depth_3step() (in module DiadFit.density_depth_crustal_profiles) loop_pressure_depth_4step() (in module DiadFit.density_depth_crustal_profiles) loop_R_b_constant_Pext() (in module DiadFit.relaxifi) lower_bck_diad1 (DiadFit.diads.diad1_fit_config attribute) lower_bck_diad2 (DiadFit.diads.diad2_fit_config attribute)

M

make_evaluate_mixed_spectra() (in module DiadFit.H2O_fitting) mavko_debari() (in module DiadFit.density_depth_crustal_profiles) merge_fit_files() (in module DiadFit.densimeters) merge_in_carb_SO2() (in module DiadFit.densimeters) mix_fugacity() (in module DiadFit.CO2_EOS) mix_fugacity_ind() (in module DiadFit.CO2_EOS) mix_lnphi() (in module DiadFit.CO2_EOS) mixEOS() (in module DiadFit.CO2_EOS) mixEOS_CF() (in module DiadFit.CO2_EOS) mixing_rules() (in module DiadFit.CO2_EOS) mixpressure() (in module DiadFit.CO2_EOS) mixvolume() (in module DiadFit.CO2_EOS) model_name (DiadFit.diads.diad1_fit_config attribute) (DiadFit.diads.diad2_fit_config attribute) (DiadFit.diads.generic_peak_config attribute)

module DiadFit.argon_lines DiadFit.CO2_EOS DiadFit.CO2_in_bubble_error DiadFit.densimeter_fitting DiadFit.densimeters DiadFit.density_depth_crustal_profiles DiadFit.diads DiadFit.error_propagation DiadFit.H2O_fitting DiadFit.importing_data_files DiadFit.molar_gas_proportions DiadFit.ne_lines DiadFit.Psensor DiadFit.relaxifi mol_vol_to_density() (in module DiadFit.CO2_EOS)

N

N_poly_bck_diad1 (DiadFit.diads.diad1_fit_config attribute) N_poly_bck_diad2 (DiadFit.diads.diad2_fit_config attribute) N_poly_carb_bck (DiadFit.diads.generic_peak_config attribute)

name (DiadFit.diads.generic_peak_config attribute) Ne_peak_config (class in DiadFit.ne_lines) Neon_id_config (class in DiadFit.ne_lines)

O

objective_function_CO2_dens() (in module DiadFit.CO2_EOS) objective_function_depth() (in module DiadFit.relaxifi)

objective_function_Temp() (in module DiadFit.CO2_EOS) outlier_sigma (DiadFit.diads.generic_peak_config attribute)

P

peak_prominence() (in module DiadFit.diads) plot_and_save_CO2cali_pickle() (in module DiadFit.densimeter_fitting) plot_Ar_corrections() (in module DiadFit.argon_lines) plot_diad() (in module DiadFit.diads) plot_diad_groups() (in module DiadFit.diads) plot_peak_params() (in module DiadFit.diads) plot_secondary_peaks() (in module DiadFit.diads) power_creep_law_constants (class in DiadFit.relaxifi) prezzi() (in module DiadFit.density_depth_crustal_profiles) propagate_CO2_in_bubble() (in module DiadFit.CO2_in_bubble_error)

propagate_CO2_in_bubble_ind() (in module DiadFit.CO2_in_bubble_error) propagate_error_split_argon_peakfit() (in module DiadFit.densimeters) propagate_error_split_neon_peakfit() (in module DiadFit.densimeters) propagate_FI_uncertainty() (in module DiadFit.error_propagation) propagate_microthermometry_uncertainty() (in module DiadFit.error_propagation) pure_lnphi() (in module DiadFit.CO2_EOS) pureEOS() (in module DiadFit.CO2_EOS) pureEOS_CF() (in module DiadFit.CO2_EOS) purepressure() (in module DiadFit.CO2_EOS) purevolume() (in module DiadFit.CO2_EOS)

R

rasmussen() (in module DiadFit.density_depth_crustal_profiles) read_HORIBA_to_df() (in module DiadFit.importing_data_files) read_pfiles() (in module DiadFit.Psensor) read_witec_to_df() (in module DiadFit.importing_data_files) reg_Ne_lines_time() (in module DiadFit.ne_lines)

remove_diad_baseline() (in module DiadFit.diads) remove_Ne_baseline_pk() (in module DiadFit.ne_lines) report_info() (in module DiadFit.Psensor) return_other_params (DiadFit.diads.diad1_fit_config attribute) (DiadFit.diads.diad2_fit_config attribute) ryan_lerner() (in module DiadFit.density_depth_crustal_profiles)

S

save_settings() (in module DiadFit.importing_data_files) sil_bck_pos_Schiavi_andesite (class in DiadFit.H2O_fitting) sil_bck_pos_Schiavi_basalt (class in DiadFit.H2O_fitting) sil_bck_pos_Schiavi_basanite (class in DiadFit.H2O_fitting) sil_bck_pos_Schiavi_rhyolite (class in DiadFit.H2O_fitting)

smooth_and_trim_around_host() (in module DiadFit.H2O_fitting) stitch_dataframes_together() (in module DiadFit.H2O_fitting) stitch_metadata_in_loop_horiba() (in module DiadFit.importing_data_files) stitch_metadata_in_loop_witec() (in module DiadFit.importing_data_files) stretch_at_constant_Pext() (in module DiadFit.relaxifi) stretch_in_ascent() (in module DiadFit.relaxifi)

T

trough_or_peak_higher() (in module DiadFit.H2O_fitting)

U

update_par() (DiadFit.diads.diad1_fit_config method) (DiadFit.diads.diad2_fit_config method)

upper_bck_diad1 (DiadFit.diads.diad1_fit_config attribute) upper_bck_diad2 (DiadFit.diads.diad2_fit_config attribute)

W

water_bck_pos (class in DiadFit.H2O_fitting)

X

x_range_baseline (DiadFit.diads.diad1_fit_config attribute) (DiadFit.diads.diad2_fit_config attribute)

x_range_bck (DiadFit.diads.generic_peak_config attribute) x_range_residual (DiadFit.diads.diad1_fit_config attribute) (DiadFit.diads.diad2_fit_config attribute)

Y

y_range_baseline (DiadFit.diads.diad1_fit_config attribute) (DiadFit.diads.diad2_fit_config attribute)